Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
KIRP rs2195349 chr5:85942744 C/T 6.83E-12 289 8.6 23.1 25.82 KM Plot
KIRP rs2232423 chr6:28366151 A/G 2.0E-8 284 25.58 26.37 9.77 KM Plot
KIRP rs2232426 chr6:28360659 G/C 2.0E-8 284 25.58 26.37 9.77 KM Plot
KIRP rs2232429 chr6:28359632 T/G 2.0E-8 284 25.58 26.37 9.77 KM Plot
KIRP rs2235369 chr6:14118505 G/A 0.000186 286 25.37 34 8.67 KM Plot
KIRP rs2240817 chr2:128471839 A/G 1.26E-6 287 25.97 22.57 8.47 KM Plot
KIRP rs2241037 chr16:90101827 C/T 1.73E-7 286 24.67 38.05 10.7 KM Plot
KIRP rs2247394 chr21:32722354 A/G 2.06E-10 280 26.4 21.08 10.7 KM Plot
KIRP rs2247685 chr7:45743128 T/G 0.000159 287 25.57 26 25.23 KM Plot
KIRP rs2247709 chr7:45743867 G/C 0.000159 287 25.57 26 25.23 KM Plot
KIRP rs2250704 chr1:231486647 A/G 0.000197 285 20.6 26.3 25.75 KM Plot
KIRP rs2250719 chr1:231486208 G/A 4.13E-5 285 21.97 25.93 25.5 KM Plot
KIRP rs2260080 chr13:114156093 C/T 0.000178 288 25.5 28.37 12.57 KM Plot
KIRP rs2260255 chr13:114173232 A/G 8.19E-5 288 25.53 28.17 12.57 KM Plot
KIRP rs2260256 chr13:114173236 A/G 8.19E-5 288 25.53 28.17 12.57 KM Plot